Madoka Kaname, an ordinary middle-schooler, along with her best friend Sayaka Miki, are offered the chance to have any wish they want granted by the mysterious Kyubey, and become magical girls and fight witches. However, fellow magical girl Homura Akemi seems intent on stopping Madoka from becoming a magical girl at any cost. Puella Magi Madoka Magica the Movie Part I: Beginnings is a retelling of the first half of the TV anime series.

As the young girls have discovered the truth about the cruel fate of a magical girl, one magical girl after another is destroyed. Throughout it all, there is one magical girl who continues to fight alone - Homura Akemi. Puella Magi Madoka Magica the Movie Part II: Eternal is a retelling of the second half of the TV anime series.

Following Madoka's rewriting of the universe, sacrificing herself and her happy normal days to save all magical girls from the cruel fate that awaited them by wiping witches out of existence, the despair still manifest into creatures known as nightmares. Magical girl Homura Akemi continues to fight alone in the hope that she will be able to see Madoka smile again.